That was me
It wasn't just when she woke up it was all day long and great huge gobs of it. Called the vet and she said it could be allergies and if it wasn't green it was OK. I stopped feeding Canidae to her because she was pooing so much and was really soft. Around the same time the eye stuff stopped and was back to normal, so I figured it was just something in the air. I really didn't connect the two until I read that someone else on the forum had stopped feeding it to their dogs because of that. When I asked the vet she said that sometimes allergies (including food allergies) will irritate the mucous (sp?) membranes of the eye and cause a lot of discharge.